PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0129s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 215aa MW: 24979.3 Da PI: 6.2334

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0129s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.8	2.3e-15	8	139	4	127
NAM 4 GfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk...kvkaeekewyfFs...krdkkyatgkrknratk....s 80 ++rF+P+dee+ + +L +k++ + l+ + i+ +d y+++P + +k + e + wyf + +r + +a++ r+nr ++ Araha.0129s0005.1.p 8 CVRFNPSDEEIFQTFLIPKLALPEdapLPN-SLIEPFDFYRFDPITAEKpgsVFFPEGNFWYFIIicvTRTRLTARSVRPNREIRtnpfL 96 79***************98777533333.56********997544433347889999752114555566788999965555778 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g W++ g ++++++ ++ g k+t + +++ kt W m ey+ Araha.0129s0005.1.p 97 GKWRKYGVTEKITQ-GEVFLGKKHTYDYL---NQQNLKTGWRMSEYE 139 99*******9.9999**9999...344469******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	22.441	5	156	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-19	7	156	IPR003441	NAC domain
Pfam	PF02365	3.7E-11	9	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAAQNLHCVR FNPSDEEIFQ TFLIPKLALP EDAPLPNSLI EPFDFYRFDP ITAEKPGSVF 60 FPEGNFWYFI IICVTRTRLT ARSVRPNREI RTNPFLGKWR KYGVTEKITQ GEVFLGKKHT 120 YDYLNQQNLK TGWRMSEYER PGNAFQRLVV VHLFYKTTLD QTLLDDQQQE NEVHAHGNVV 180 GVDHVVDQEV EHHQIHGDVV EQIVNNQVIE KNLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0129s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869281.1	1e-128	uncharacterized protein LOC9300309 isoform X3
TrEMBL	D7MSW3	1e-128	D7MSW3_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_8001357	1e-128	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17442	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	7e-10	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Araha.0129s0005.1.p