PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0214s0002.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 170aa    MW: 17815.3 Da    PI: 10.3399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0214s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.2e-13135160127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ykt++C+++++ G C yGdrC+FaHg+
  Araha.0214s0002.2.p 135 YKTKICDRYSK-GNCTYGDRCHFAHGE 160
                          9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003222.3E-1141111IPR004087K Homology domain
SuperFamilySSF547912.19E-1441111IPR004088K Homology domain, type 1
PROSITE profilePS5008413.81642106IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-1543110IPR004088K Homology domain, type 1
CDDcd001051.82E-1144106No hitNo description
PfamPF000131.0E-1045107IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.9E-17129164IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-8134160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9134164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.934134161IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10135160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MTNLRPPVAQ VSRNMQGFGG VGGRFSGRGD PGLGPVSIFG ASATSKISVD ASLAGAIIGK  60
GGIHSKQICR QTGAKLSIKD HERDPNLKII ELEGTFEQIN IASGMVRELI GRLGSAKKPQ  120
GISGPEGKPH PGSNYKTKIC DRYSKGNCTY GDRCHFAHGE AELRRSGIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0214s0002.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179740.0AK117974.1 Arabidopsis thaliana At5g06770 mRNA for unknown protein, complete cds, clone: RAFL19-18-C06.
GenBankAP0020320.0AP002032.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15.
GenBankBT0052600.0BT005260.1 Arabidopsis thaliana At5g06770 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873278.11e-115zinc finger CCCH domain-containing protein 52 isoform X1
RefseqXP_020878769.11e-116zinc finger CCCH domain-containing protein 52 isoform X3
SwissprotQ9FG301e-112C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLD7LZT81e-114D7LZT8_ARALL; KH domain-containing protein
STRINGfgenesh1_pm.C_scaffold_60005151e-115(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-101C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]