PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0283s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WOX

Protein Properties

Length: 266aa MW: 29467.7 Da PI: 5.1839

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0283s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1.1e-20	97	157	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l ++ e++V++WFqNrRa+ k+ Araha.0283s0005.1.p 97 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITEELsqhgEIAEQNVYNWFQNRRARSKR 157 89***************99************************************97 PP
2	Wus_type_Homeobox	102.5	3e-33	96	159	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq Araha.0283s0005.1.p 96 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITEELSQHGEIAEQNVYNWFQNRRARSKRKQ 159 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-17	92	160	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.916	93	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-17	93	159	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-14	95	162	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-18	97	157	IPR001356	Homeobox domain
CDD	cd00086	1.94E-12	97	159	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMEWDNQQQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL 60 VEMHKTLTAQ QDLAGGRLGG LYADPMMSSI GHKMTARQRW TPTPVQLQIL ERIFDQGTGT 120 PSKQKIKEIT EELSQHGEIA EQNVYNWFQN RRARSKRKQQ GGGSSGNNNG ESEVETEVEA 180 LNEKRVRPES LLSLPDGNNN NNVLGTTTTT TPRAEDLCFQ SPEMSSDLHL LGVLANPRDE 240 HLVGKMGLSE SYNLYDHVED YGMSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	158	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0283s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY048268	0.0	AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBank	AY251404	0.0	AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBank	BT000538	0.0	BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002867068.1	1e-173	WUSCHEL-related homeobox 13
Swissprot	O81788	1e-163	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	D7MCZ4	1e-172	D7MCZ4_ARALL; Homeobox-leucine zipper protein
STRING	scaffold_700564.1	1e-173	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-141	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Araha.0283s0005.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]