PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0323s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 172aa    MW: 19652.3 Da    PI: 10.3416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0323s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.5e-07961371454
                          HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          d+i + +++Lr+ +P+ + + +s  +s + +L+++++YI++L
  Araha.0323s0004.1.p  96 DQITDLISKLRQSIPEiRQNRRSNTVSASKVLQETCNYIRNL 137
                          799*************9977777779999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.25282137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-795160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-796140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005773Cellular Componentvacuole
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
TPILNHCFLL CTCRRHIQHP YLRLFVLLSL ESGPSSLYNT ISSPSFFSLS FDKHKQSHQE  60
KRAFSWIHIH KNIFQIKMSS SRRSRQASSS SRISDDQITD LISKLRQSIP EIRQNRRSNT  120
VSASKVLQET CNYIRNLNKE ADDLSDRLTQ LLESIDPNSP QAAVIRSLIN G*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0323s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188870.0AK118887.1 Arabidopsis thaliana At5g15160 mRNA for unknown protein, complete cds, clone: RAFL21-22-D11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197020.12e-58BANQUO 2
RefseqXP_002873710.12e-58transcription factor PRE2
SwissprotQ9LXG51e-59PRE2_ARATH; Transcription factor PRE2
TrEMBLD7M6S04e-57D7M6S0_ARALL; BHLH family protein
STRINGAT5G15160.16e-58(Arabidopsis thaliana)
STRINGscaffold_601543.16e-58(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15160.13e-51BANQUO 2
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Mao WT, et al.
    The C-Terminal Sequence and PI motif of the Orchid (Oncidium Gower Ramsey) PISTILLATA (PI) Ortholog Determine its Ability to Bind AP3 Orthologs and Enter the Nucleus to Regulate Downstream Genes Controlling Petal and Stamen Formation.
    Plant Cell Physiol., 2015. 56(11): p. 2079-99
    [PMID:26423960]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]