PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0425s0007.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

YABBY

Protein Properties

Length: 186aa MW: 20786.7 Da PI: 9.5468

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0425s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	255.1	1.1e-78	2	161	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk.veeenlksnvekee 90 +v+ sse+vCyv+C+fC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ +++a ++++l+ ++++++s+v++++ Araha.0425s0007.1.p 2 SVDLSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTAPPP---------IHQDLQpPHKQHTTSMVTRKD 82 67889*******************************************9998877655.........6666652689999**** PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +as+s+s+++lse+ d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Araha.0425s0007.1.p 83 CASSSRSTNNLSEHIDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 161 ******************99.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.0E-70	6	161	IPR006780	YABBY protein
SuperFamily	SSF47095	1.07E-7	106	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSVDLSSERV CYVHCSFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTAPP 60 PIHQDLQPPH KQHTTSMVTR KDCASSSRST NNLSEHIDRE APRMPPIRPP EKRQRVPSAY 120 NRFIKEEIQR IKACNPEISH REAFSTAAKN WAHFPHIHFG LKLDGNKKGK QLDQSVAGQK 180 SNGYY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0425s0007.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF136539	0.0	AF136539.1 Arabidopsis thaliana YABBY2 (YABBY2) mRNA, complete cds.
GenBank	BT004243	0.0	BT004243.1 Arabidopsis thaliana clone RAFL15-27-O09 (R20923) At1g08465 mRNA, complete sequence.
GenBank	DQ108871	0.0	DQ108871.1 Arabidopsis thaliana clone 6413 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868330.1	1e-134	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	1e-132	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	D7KIS2	1e-132	D7KIS2_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.1__861__AT1G08465.1	1e-133	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-135	YABBY family protein

Link Out ? help Back to Top
Phytozome	Araha.0425s0007.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]