PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0425s0020.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 484aa MW: 53830.5 Da PI: 8.1035

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0425s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	179	220	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Araha.0425s0020.1.p 179 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 220 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-6	176	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	178	222	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	179	220	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.19E-22	180	232	No hit	No description
SuperFamily	SSF57959	7.5E-7	180	222	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-7	181	224	No hit	No description
PROSITE pattern	PS00036	0	183	198	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-29	261	336	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MANHRISEAT NHNHNNHLPY SLIHGLNNNH PSGFINQDGS SSFDFGELEE AIVLQGVKYR 60 NDEAKPPLLG GGGGATTLEM FPSWPIRTHQ TLPTESSKSG GESSDSGSAN FSGKAESQQP 120 ESPMSSKQNH HHLMLQHHHH NMANSSSTSG LPSTSRTLAP PKPSEDKRKA TTSGKQLDAK 180 TLRRLAQNRE AARKSRLRKK AYVQQLESSR IKLSQLEQEL QRARSQGLFM GGCGPPGPNI 240 TSGAAIYDME YGRWLEDDNR HMSEIRTGLQ AHLSDNDLRL IVDGYIAHFD EIFRLKAVAA 300 KADVFHLIIG TWMSPAERCF IWMAGFRPSD LIKILVSQMD LLTEQQLMGI YSLQHSSQQA 360 EEALSQGLEQ LQQSLIDTLA ASPVIDGMQQ MAVALGKISN LEGFIRQADN LRQQTVHQLR 420 RILTVRQAAR CFLVIGEYYG RLRALSSLWL SRPRETLMSD ETSCQTTTDL QIVQSSRNHF 480 SNF*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MANHRISEAT NHNHNNHLPY SLIHGLNNNH PSGFINQDGS SSFDFGELEE AIVLQGVKYR  60
NDEAKPPLLG GGGGATTLEM FPSWPIRTHQ TLPTESSKSG GESSDSGSAN FSGKAESQQP  120
ESPMSSKQNH HHLMLQHHHH NMANSSSTSG LPSTSRTLAP PKPSEDKRKA TTSGKQLDAK  180
TLRRLAQNRE AARKSRLRKK AYVQQLESSR IKLSQLEQEL QRARSQGLFM GGCGPPGPNI  240
TSGAAIYDME YGRWLEDDNR HMSEIRTGLQ AHLSDNDLRL IVDGYIAHFD EIFRLKAVAA  300
KADVFHLIIG TWMSPAERCF IWMAGFRPSD LIKILVSQMD LLTEQQLMGI YSLQHSSQQA  360
EEALSQGLEQ LQQSLIDTLA ASPVIDGMQQ MAVALGKISN LEGFIRQADN LRQQTVHQLR  420
RILTVRQAAR CFLVIGEYYG RLRALSSLWL SRPRETLMSD ETSCQTTTDL QIVQSSRNHF  480
SNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0425s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314757	0.0	AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBank	HQ132743	0.0	HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870852.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1J3D5K8	0.0	A0A1J3D5K8_NOCCA; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRING	AT1G08320.3	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Araha.0425s0020.1.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]