PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0464s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 423aa    MW: 48648.3 Da    PI: 5.6014
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0464s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48.1e-14232276147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + +WT+ Ed +l+++ ++ + + W+tIa+++  gRt+kqc++rw+++
  Araha.0464s0001.1.p 232 KVKWTESEDIKLKELMALGPQK-WTTIANKFE-GRTGKQCRERWYNH 276
                          579************9988888.*********.************98 PP
2Myb_DNA-binding43.76.4e-14283327147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + +W++eE+++l++ +k  G+  W +Ia++++ gR+ +++k++w++ 
  Araha.0464s0001.1.p 283 KTKWSEEEEQILIEEHKVVGTQ-WIKIAQKLP-GRSYNSVKNHWNST 327
                          579*****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.578227277IPR017930Myb domain
SMARTSM007172.2E-12231279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-22234285IPR009057Homeodomain-like
CDDcd001671.02E-11234277No hitNo description
PfamPF139217.3E-15235292No hitNo description
SuperFamilySSF466898.79E-26257336IPR009057Homeodomain-like
PROSITE profilePS5129424.423278332IPR017930Myb domain
SMARTSM007175.6E-13282330IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-17286330IPR009057Homeodomain-like
CDDcd001670.00233304328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MEYSSISDEN SIVNDAHRCP VNDDASHIPK NHLNFFNDNL GQSFLTGWSL SPDLTDICNE  60
HHHQNLIPFI PIYDSQNQNL VTNQNHLVYN SSSYEIPSNY PFMSIKPYSN ADTFEQSMNN  120
IANNKKIHMI DNTPLFANPK GMFENFHDLW GNTIGDEIVH NEELINKGYE PALDQMMGEP  180
QSFDVPVPKG IKNTTKEIMN QREDDKMKKT YRKKKKKAVS TSKYLKNSDI IKVKWTESED  240
IKLKELMALG PQKWTTIANK FEGRTGKQCR ERWYNHVHPD IKKTKWSEEE EQILIEEHKV  300
VGTQWIKIAQ KLPGRSYNSV KNHWNSTKRK VQNQSGGTVK PVGNNILENY IRYVTINNDD  360
FLKTAESDGE TTNSETDDDS KDMLYGEMNL SLEATTTQTT EPLTDASTIV PYVPMPEENS  420
TME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-342293314108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0464s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868650.20.0transcription factor MYB115 isoform X1
TrEMBLA0A178UAQ00.0A0A178UAQ0_ARATH; MYB22
STRINGfgenesh1_pm.C_scaffold_70026921e-145(Arabidopsis lyrata)
STRINGBostr.7200s0024.1.p1e-144(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.12e-99myb domain protein 22