PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0490s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 377aa    MW: 42787 Da    PI: 4.5644
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0490s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.42.2e-33201122102
                          HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl+k ye+++d++++ +isws +  nsfv+ld + f+ ++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F kg+
  Araha.0490s0001.1.p  20 FLRKCYEMVDDSSTDAIISWStSADNSFVILDANVFSVELLPKYFKHSNFSSFIRQLNIYGFRKVDADR---------WEFANDGFVKGQ 100
                          9********************7778*****************************************999.........************ PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkks 102
                          k+ll+++ r+k+
  Araha.0490s0001.1.p 101 KDLLKNVIRRKN 112
                          ******999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3413105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-3215110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5316110IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.3E-2920110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVKSTDGGGG GSSSSSVAPF LRKCYEMVDD SSTDAIISWS TSADNSFVIL DANVFSVELL  60
PKYFKHSNFS SFIRQLNIYG FRKVDADRWE FANDGFVKGQ KDLLKNVIRR KNVQSSEQSK  120
QENRSTSTYA QEKTEKSGLW KEVDILKGDK QVLAQELIKV RQYQETTDTK MLHLEDRVQG  180
MEESQQEMLS FLVMVMKNPS LLVQLLQPKE KNSWRKAEGA TIVEEVTDEG ESNSYGLPLV  240
TYQPPSDSGT AKSNSNDVND FLRNADMLKF CLDENHVPLI IPDLYDDGAW EKLLLLSPSR  300
KKTKKQENIV KKGKDDSTLE EEEEDGTMEL EKSHMLKLIS EEMEKPDDFE FGQLTPERSR  360
NLEILTEQME LLASNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25811017129Heat shock factor protein 1
5d5v_B2e-25811017129Heat shock factor protein 1
5d5v_D2e-25811017129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0490s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2518660.0AJ251866.1 Arabidopsis thaliana mRNA for heat shock factor 5 (hsf5 gene).
GenBankAY0943960.0AY094396.1 Arabidopsis thaliana At1g67970/T23K23_18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887161.10.0heat stress transcription factor A-8
SwissprotQ9S7U50.0HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW840.0D7KW84_ARALL; Predicted protein
STRINGAl_scaffold_0002_14610.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.10.0heat shock transcription factor A8