PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0503s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 243aa    MW: 28010.1 Da    PI: 7.3901
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0503s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.35.3e-3237142199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Araha.0503s0010.1.p  37 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCv 126
                          89****************************66677899*************************************************443 PP

                          SS..SEE..EEEEE-S CS
                   B3  86 gr..sefelvvkvfrk 99 
                          g+  ++ +l++ ++r+
  Araha.0503s0010.1.p 127 GDsgRDSRLFIDWRRR 142
                          3325677788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-4129144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-3034129IPR015300DNA-binding pseudobarrel domain
CDDcd100174.75E-2535137No hitNo description
SMARTSM010199.5E-2337143IPR003340B3 DNA binding domain
PfamPF023623.4E-2937142IPR003340B3 DNA binding domain
PROSITE profilePS5086314.74837143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMTDLSLTRD EDEEEEAKPL EEEGAGTRQV AEREHMFDKV VTPSDVGKLN RLVIPKQHAE  60
RFFPLDSSSN EKGLLLNFED LTGKSWRFRY SYWNSSQSYV MTKGWSRFVK DKKLDAGDIV  120
SFQRCVGDSG RDSRLFIDWR RRPKVPDHPH FAAGAMFPRF YSFPSTSYNL YNHQQQRHHH  180
GGGYNYHQIP REFGYGYFVR SVDQRNNPAA AVADPLLRLG SSSEDDHFTK KGKSSLSFDL  240
DQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-80301451116B3 domain-containing transcription factor NGA1
5os9_B2e-80301451116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0503s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN4288550.0FN428855.1 Arabidopsis halleri subsp. halleri partial BAC clone 7G24 containing mtp1-A1 and mtp-A2 genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872500.11e-163B3 domain-containing transcription factor NGA1
RefseqXP_020885656.11e-163B3 domain-containing transcription factor NGA1
SwissprotO827991e-152NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLD4HU081e-162D4HU08_ARAHH; NGATHA1
STRINGfgenesh2_kg.181__3__AT2G46870.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-127B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]