PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0632s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 188aa    MW: 21357.5 Da    PI: 8.849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0632s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-132877455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          h+e+E++RR+++ s +  Lr+llP  +   ++K s a+ +  Av+YI +Lq
  Araha.0632s0002.1.p 28 VHKEVEKQRRQEMASLYTSLRSLLPLEF--IQGKRSTADQVNGAVNYIEYLQ 77
                         6*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-132389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.9252476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.49E-102681No hitNo description
Gene3DG3DSA:4.10.280.104.6E-112790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-112877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-63082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNTFDQEKKR RRSKKPRVSS EENMEKIVHK EVEKQRRQEM ASLYTSLRSL LPLEFIQGKR  60
STADQVNGAV NYIEYLQRNI KDISSKRDDL VLLSGRSFGS SNEQDWNQIS NHTVIIRPCL  120
VGIEIVFSVL QTPFSSVLKV LREHGLCVLG CISSSVNDRL IHTLQAEVND LALIDLADLK  180
DTLTLMK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1615EKKRRRSKKP
2714KKRRRSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0632s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426210.0AY142621.1 Arabidopsis thaliana unknown protein (At4g25400) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873857.11e-121LOW QUALITY PROTEIN: transcription factor bHLH118
SwissprotQ9STJ71e-102BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A2H1ZEP91e-110A0A2H1ZEP9_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGXP_010448440.11e-107(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.15e-91bHLH family protein