PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0644s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 115aa MW: 13612.1 Da PI: 8.7932

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0644s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42	2.1e-13	22	77	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +++rr+ +NRe+ArrsR RK+ ++eL v L +eN L+++l++ +++ +++ Araha.0644s0001.1.p 22 RKQRRMLSNRESARRSRMRKQRHLDELWAQVIRLRNENNCLIDKLNRVSETQDSVL 77 79**********************************************99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-14	18	82	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	20	83	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.46E-12	22	71	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-10	22	94	No hit	No description
Pfam	PF00170	3.1E-11	22	80	IPR004827	Basic-leucine zipper domain
CDD	cd14702	5.72E-14	23	71	No hit	No description
PROSITE pattern	PS00036	0	25	40	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MISNNSTSDE DHHQSIVILD ERKQRRMLSN RESARRSRMR KQRHLDELWA QVIRLRNENN 60 CLIDKLNRVS ETQDSVLKEN SKLKEEASDL RQLVCELKSN KNNNNSFSRE FEDN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	41	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0644s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007178	1e-153	AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBank	CP002685	1e-153	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010502422.1	7e-71	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-29	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A178VS52	7e-63	A0A178VS52_ARATH; BZIP48
TrEMBL	D7LQQ5	6e-63	D7LQQ5_ARALL; Uncharacterized protein
TrEMBL	Q8RU59	7e-63	Q8RU59_ARATH; BZIP protein (AtbZIP48)
STRING	XP_010502422.1	3e-70	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04038.1	3e-67	basic leucine-zipper 48

Link Out ? help Back to Top
Phytozome	Araha.0644s0001.1.p

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]