PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0676s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 250aa    MW: 28433 Da    PI: 4.8477
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0676s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.55.8e-23103163259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK++k s++ r YYrCt+a   +C+++k+v++ +++p v  +tY g+H ++
  Araha.0676s0001.1.p 103 NDGFAWRKYGQKTIKTSPHQRCYYRCTYAkdqNCNATKRVQKIKDNPPVYRTTYMGKHVCT 163
                          7***************************99999*************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-2496163IPR003657WRKY domain
PROSITE profilePS5081120.04897160IPR003657WRKY domain
SuperFamilySSF1182901.83E-22100163IPR003657WRKY domain
SMARTSM007744.5E-33102164IPR003657WRKY domain
PfamPF031064.6E-23103162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVSNIDHKAM EALLRGQGCA NSLKILLENC EISSVSTEPL INTILDSFSL VLSFVDSPNP  60
PIYHESSSEN MARPTPRRSS KEKLCGAQDL VNYRDDSPTP CPNDGFAWRK YGQKTIKTSP  120
HQRCYYRCTY AKDQNCNATK RVQKIKDNPP VYRTTYMGKH VCTDSVGHDD THSSKMIQFD  180
QVVSESIMPQ LTTIDHQVIT MEDKVTDYIM NQECDINDYL VDYDQFWVNE FPPFPSDDTM  240
FLDIIAAFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-17103162968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0676s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935210.0AB493521.1 Arabidopsis thaliana At1g66550 mRNA for hypothetical protein, partial cds, clone: RAAt1g66550.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865923.11e-172probable WRKY transcription factor 67
SwissprotQ93WV71e-144WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLD7KTR81e-156D7KTR8_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_20009691e-157(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.21e-148WRKY DNA-binding protein 67