PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0689s0013.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 264aa MW: 30086.7 Da PI: 6.1364

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0689s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.9	9.4e-30	97	184	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gCka++ ++ke++gkw++tk+++eHnH+l+p Araha.0689s0013.1.p 97 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLMP 184 9****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-27	97	184	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDFRIDNGVA AGMMMGIPVE LEVTTVENHN EMGESSGQAM IEQDDDNHNE LGENSGEQDE 60 KVDPDSIPLA VADMTEAQGD EPYVGQEFES EAAAHGFYNA YATKVGFVIR VSKLSRSRHD 120 GSPIGRQLVC NKEGYRLPSK RDKVIRQRAE TRVGCKAMIL IRKENSGKWV ITKFVKEHNH 180 SLMPGRVRRG CIYDQYPNEH DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQHNESLSK 240 RIQHIVDNVR NLEQRDHQQN QQV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0689s0013.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058089	0.0	AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020882000.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
TrEMBL	F4J8B6	0.0	F4J8B6_ARATH; Far-red impaired responsive (FAR1) family protein
STRING	Bostr.20903s0171.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Araha.0689s0013.1.p