PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0709s0005.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 206aa MW: 23727.7 Da PI: 10.3276

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0709s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.7	7.5e-19	20	69	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k++en+ r +tfskR++gi+KK +EL v+Cd+eva +ifs+ k y+++ Araha.0709s0005.1.p 20 KKVENYGDRMITFSKRKAGIFKKINELVVMCDVEVAFLIFSQAKKPYTFA 69 6789********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.57E-24	12	87	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.801	12	72	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-23	12	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-17	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-20	21	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-17	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-17	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSTKQAKGRK TKGKQKIEMK KVENYGDRMI TFSKRKAGIF KKINELVVMC DVEVAFLIFS 60 QAKKPYTFAH PSMEEVADRL KNSSRQEPLA KDDTGPLVEA YKKRRFHDLI EKMEALEEEL 120 AMDLEKLKLM KESRNEKKLD KMWWNFPSKG LSMEELKQRH QAIVELRDNL CDNMALLRLG 180 KDGGSSSVRV GRRLSGGVRL FDREA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3kov_B	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3kov_I	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3kov_J	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3p57_A	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3p57_B	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3p57_C	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3p57_D	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3p57_I	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
3p57_J	2e-13	13	104	1	90	Myocyte-specific enhancer factor 2A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0709s0005.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC016829	0.0	AC016829.7 Arabidopsis thaliana chromosome III BAC T6K12 genomic sequence, complete sequence.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBank	DQ056586	0.0	DQ056586.1 Arabidopsis thaliana MADS-box family protein (At3g04100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882329.2	1e-144	MADS-box transcription factor 23
TrEMBL	D7L216	1e-143	D7L216_ARALL; MADS-box family protein
STRING	fgenesh1_pm.C_scaffold_3000303	1e-144	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	1e-100	AGAMOUS-like 57

Link Out ? help Back to Top
Phytozome	Araha.0709s0005.1.p