PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0838s0012.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 273aa MW: 31197.1 Da PI: 9.8631

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0838s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.8	9.7e-19	131	219	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp +f+ + +ee+++++lede+g+++e +i r+++ l++GWk+F+ +++L++gD ++F+l++ ++f Araha.0838s0012.1.p 131 FVKSMVRSHVYSCFWLGLPSRFCVGNF--PEETMEIVLEDEEGEEYEAVYIGRRSG----LSGGWKRFALDHKLDDGDALLFELVEPKRF 214 89*******************8886..66899************666665....9********************9987887 PP ..EEEEE CS B3 91 elvvkvf 97 ++ vf Araha.0838s0012.1.p 215 --KIYVF 219 ..66666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.47E-23	124	221	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-21	124	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.87E-19	129	220	No hit	No description
Pfam	PF02362	2.6E-17	131	219	IPR003340	B3 DNA binding domain
SMART	SM01019	3.8E-27	131	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.239	131	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAYEEARKLR LQENHKRFQD LGISQISKTL TQITKKTPQR NPRPIDKALF ATAEPRRSSR 60 IRTVISSYRD DVAVDTGRTS NLRRSRHSST WATYISRPLH ECKFASYEEK VGALKAAEKF 120 QSRLESPHPS FVKSMVRSHV YSCFWLGLPS RFCVGNFPEE TMEIVLEDEE GEEYEAVYIG 180 RRSGLSGGWK RFALDHKLDD GDALLFELVE PKRFKIYVFK GNENANLTSA GKRGRATSSE 240 EEDKDVEESG DEEHSSRATK RSSARLLRKR KA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0838s0012.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB019228	1e-85	AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBank	CP002688	1e-85	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878363.1	1e-179	putative B3 domain-containing protein At5g58280 isoform X2
Swissprot	Q9FHB2	1e-152	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A178ULA5	1e-165	A0A178ULA5_ARATH; Uncharacterized protein
STRING	XP_006280945.1	1e-160	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16141	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-127	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.0838s0012.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]