PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0859s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 306aa    MW: 34304.3 Da    PI: 8.9007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0859s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-053961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Araha.0859s0001.1.p 39 YTCSFCRREFKSAQALGGHMNVH 61
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-63665No hitNo description
SMARTSM003550.00523961IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-53962IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1573966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEKPGGFWIP KTSNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFKS AQALGGHMNV  60
HRRDRARLKQ ADEQYLFPKY PSSPEYPSHK DSDNIHETSS YTLVFNSKPN YFKTQHSCVI  120
DLSSSSSLPY LTPSRVSSGL PGKQNTSFSS PPSFVVEPSK NSKKIPSSSP WSFPSTFVEQ  180
KRCDLYEIPA MEGEKKRKTE SDVPKIGQKA KLSLGNTTDL SVSMNLVIHQ SFPIAAHGSD  240
EEIGRGDIRK RRRRHESPSQ QSIFISSLSC KSDIITRNEE SKHKGDRLED LDLELRLGTD  300
PPKGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-133461229superman protein
2l1o_A6e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248252RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0859s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181310.10.0zinc-finger protein 10
SwissprotO809420.0ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A178VU740.0A0A178VU74_ARATH; ZFP10
STRINGAT2G37740.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-165zinc-finger protein 10