PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0898s0012.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 943aa    MW: 107332 Da    PI: 10.0102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0898s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.5e-1515100195
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ffk l     ++++ l +p  f+++h +gk+ ++k  +l++  s ++W vk+  ++      lt+GW++F+ a++L+ gD+vvF+++g++
  Araha.0898s0012.1.p  15 FFKPL--LEGFRTH-LNIPVAFFSKHvEGKNDQNKIAKLRSdASEKTWLVKM--DGLN----LTDGWEDFAFAHDLRIGDIVVFRHEGEM 95 
                          56666..6667777.9***********777789999999997889*******..5555....***********************99988 PP

                          EE..EEE CS
                   B3  89 efelvvk 95 
                           f  +v+
  Araha.0898s0012.1.p  96 VF--HVT 100
                          88..665 PP
2B364.91.2e-201622491099
                          HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           l+++rl++p +fa+ +g++k +sk++ l +++grsW++ l+++k++ ++++++GW++F++ang+ +g   +Fkl++ +++ +v++++++
  Araha.0898s0012.1.p 162 GLRNDRLYIPLSFARLNGLNKINSKKIYLHNKEGRSWKLALKHDKSGMHTYIQTGWRSFCDANGISQGQY-TFKLVR-KSAPPVIRLCST 249
                          5789*****************************************************************6.***998.89999**99986 PP
3B367.81.5e-21272360698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++l++++l lp++f+++++++k++s +++l++e+g +W   l  + ++  ++ltkGW +F++ n++k+gD++ Fkl+g + +++v++
  Araha.0898s0012.1.p 272 VSPSSLRNNQLFLPRNFVSSNSLEKRCS-EIVLKNEQGIKWPSVL--KHYKTVTYLTKGWTSFCQVNKIKAGDSFKFKLVG-TWTKPVLS 357
                          678999999***************9998.****************..999999**************************99.78888999 PP

                          EE- CS
                   B3  96 vfr 98 
                          ++ 
  Araha.0898s0012.1.p 358 LCP 360
                          886 PP
4B357.62.4e-18465554698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++++l +++l+lp++f++++g++k++s +++l++e+g++ ++ l++   ++  ++l+kGW +F++ n++++gD++ Fkl+g +  ++v+
  Araha.0898s0012.1.p 465 VNPSSLYKDQLYLPRNFVSSNGLDKRCS-EIVLKNERGEKRTLVLKH--FKQNlTFLKKGWTSFCQVNRINAGDSFKFKLVG-TWNKPVL 550
                          6788999999***************998.****************44..4434489************************99.7777888 PP

                          EEE- CS
                   B3  95 kvfr 98 
                          +++ 
  Araha.0898s0012.1.p 551 TLCP 554
                          8886 PP
5B368.49.8e-22644731593
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++++l+ +rl+lp +fa+++g++k ++kt++l +e+grsW+++l+y+k + +++ + GWk+F++ang+ +   ++Fkl++ + + +v
  Araha.0898s0012.1.p 644 NVTASSLNCDRLYLPLSFARSNGLDKMSGKTIVLINEEGRSWKLTLKYNKAGMQTYVRPGWKRFCDANGMSQDQQFTFKLVQ-KHEPPV 731
                          578899999**********************************************************************998.444445 PP
6B363.72.8e-20756846698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++ +++ l+l k+f++++g+ k + k+++l++e+gr+W++ l++ k+   +++++GW +F++ ngLk+gD++ Fkl+g +e+ +v++
  Araha.0898s0012.1.p 756 VTASSINKDKLYLRKSFVSSNGLYKGC-KKIVLKNEWGRQWNLVLKHYKSHFFTLIKRGWASFCQGNGLKDGDSFKFKLVG-TEEMPVLS 843
                          5677888899***********999866.7****************777777669999**********************99.55558888 PP

                          EE- CS
                   B3  96 vfr 98 
                          ++ 
  Araha.0898s0012.1.p 844 LCP 846
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-2011107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1811111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54712105IPR003340B3 DNA binding domain
CDDcd100177.85E-1413100No hitNo description
SMARTSM010192.3E-2115105IPR003340B3 DNA binding domain
PfamPF023624.0E-92297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-15148248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-15149252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.042153250IPR003340B3 DNA binding domain
SMARTSM010195.9E-24154250IPR003340B3 DNA binding domain
PfamPF023622.7E-19162249IPR003340B3 DNA binding domain
CDDcd100171.80E-13163248No hitNo description
Gene3DG3DSA:2.40.330.101.9E-21259361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-20263364IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.029267361IPR003340B3 DNA binding domain
CDDcd100172.68E-14267360No hitNo description
SMARTSM010197.6E-28268362IPR003340B3 DNA binding domain
PfamPF023623.6E-20272360IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-18454555IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17457557IPR015300DNA-binding pseudobarrel domain
CDDcd100172.75E-12460554No hitNo description
PROSITE profilePS5086312.449460555IPR003340B3 DNA binding domain
SMARTSM010192.2E-27461556IPR003340B3 DNA binding domain
PfamPF023622.7E-17465554IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-20633732IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-18634732IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.099640738IPR003340B3 DNA binding domain
CDDcd100172.22E-14640726No hitNo description
SMARTSM010191.7E-27641738IPR003340B3 DNA binding domain
PfamPF023622.4E-19643733IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-20743846IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19751849IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.198751847IPR003340B3 DNA binding domain
SMARTSM010195.8E-25752848IPR003340B3 DNA binding domain
PfamPF023623.3E-19756846IPR003340B3 DNA binding domain
CDDcd100176.39E-18756846No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    Send to blast
MADQSLLHSP IKPHFFKPLL EGFRTHLNIP VAFFSKHVEG KNDQNKIAKL RSDASEKTWL  60
VKMDGLNLTD GWEDFAFAHD LRIGDIVVFR HEGEMVFHVT ALGPSCCEIQ YYTSSHNIND  120
DDRNDQTNIA SRNSSRVKKN ARKKVEPSSD HSRFMAKVSV WGLRNDRLYI PLSFARLNGL  180
NKINSKKIYL HNKEGRSWKL ALKHDKSGMH TYIQTGWRSF CDANGISQGQ YTFKLVRKSA  240
PPVIRLCSTK AKPKQRSQSD SSSDHSCFEG SVSPSSLRNN QLFLPRNFVS SNSLEKRCSE  300
IVLKNEQGIK WPSVLKHYKT VTYLTKGWTS FCQVNKIKAG DSFKFKLVGT WTKPVLSLCP  360
TNSNHDKTPL ECPNDVKSLS SNPRSGDDSS KSKEIEEENI EDKNISKTCL EIKKRKYWSR  420
CRASVENMDD DQTNIGNSSR KKRVKKNPRK NVESSSYHSS FEGSVNPSSL YKDQLYLPRN  480
FVSSNGLDKR CSEIVLKNER GEKRTLVLKH FKQNLTFLKK GWTSFCQVNR INAGDSFKFK  540
LVGTWNKPVL TLCPTESNHH KTPLECSEGN KSEESEEEGI EDKNTSQDCL EVKKRKYWSR  600
CRASAENIDD DQTNIGNSSR KKRVKKNPIK KAESSSDHSS FVANVTASSL NCDRLYLPLS  660
FARSNGLDKM SGKTIVLINE EGRSWKLTLK YNKAGMQTYV RPGWKRFCDA NGMSQDQQFT  720
FKLVQKHEPP VMRLYLAEHR PKSESSSHGS YLVGSVTASS INKDKLYLRK SFVSSNGLYK  780
GCKKIVLKNE WGRQWNLVLK HYKSHFFTLI KRGWASFCQG NGLKDGDSFK FKLVGTEEMP  840
VLSLCPAESS REKTPLECPE GSDDVKSLSS NPSSGDDSSK SEESEEESLE DKNISQDCLE  900
IKKRKYFSSY RASSSYTRNR FVTLTLTRSA FQTYKLVSFF NI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0898s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029470.0BT002947.1 Arabidopsis thaliana clone RAFL15-02-G15 (R20317) unknown protein (At1g26680) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893387.10.0B3 domain-containing protein REM17 isoform X1
SwissprotQ84WP30.0REM17_ARATH; B3 domain-containing protein REM17
TrEMBLD7KQM90.0D7KQM9_ARALL; T24P13.6
STRINGscaffold_102864.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]