PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0937s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 318aa    MW: 34698 Da    PI: 9.323
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0937s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.5e-08754345
                         SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                          W+ eE++ + +a++++  +      +W++ a++++  + l+++k ++q
  Araha.0937s0001.1.p  7 TWSREEEKAFENAIALHCVEeeitedQWNKMASMVP-SKALEEVKKHYQ 54
                         5****************999****************.***********9 PP
2Myb_DNA-binding38.82.1e-12138182347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Araha.0937s0001.1.p 138 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 182
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.429361IPR017884SANT domain
SMARTSM007176.8E-4459IPR001005SANT/Myb domain
PfamPF002491.8E-5754IPR001005SANT/Myb domain
CDDcd001671.57E-6757No hitNo description
SuperFamilySSF466891.36E-8864IPR009057Homeodomain-like
PROSITE profilePS5129416.873131187IPR017930Myb domain
SuperFamilySSF466897.9E-17133188IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17135185IPR006447Myb domain, plants
SMARTSM007172.3E-10135185IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-11136181IPR009057Homeodomain-like
PfamPF002498.0E-11138182IPR001005SANT/Myb domain
CDDcd001671.16E-9138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESVVATWSR EEEKAFENAI ALHCVEEEIT EDQWNKMASM VPSKALEEVK KHYQILLEDV  60
KAIENGQVPL PRYHHRKGLI VDEAAAAATS PANRDSHSSG SSEKKPNPGT SGISSSNGGG  120
GGRSGGSRAE QERRKGIPWT EEEHRLFLLG LDKFGKGDWR SISRNFVISR TPTQVASHAQ  180
KYFIRLNSMN RDRRRSSIHD ITTVNNQAPA VTGGQQQQQV VKHRPAQPQP QPQPQPQPHH  240
PPTMAGLGMY GGAPVGQPII APPDHMGSAV GTPVMLPPPM GTHHHHHHHH LGVAPYAVPA  300
YPVPPLPQQH PAPSTMH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-138781178RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0937s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869060.0AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195280.0AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248620.0BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564537.10.0Duplicated homeodomain-like superfamily protein
TrEMBLQ9M9A30.0Q9M9A3_ARATH; At1g49010
STRINGAT1G49010.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-154MYB family protein