PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10072s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 388aa    MW: 43500.3 Da    PI: 6.1929
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10072s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10201259563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+     l+ e+
  Araha.10072s0001.1.p 201 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 259
                           9********************************************99998887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-15197261IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.565199262IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-11201255No hitNo description
SuperFamilySSF579591.97E-10201252No hitNo description
PfamPF001706.7E-9201253IPR004827Basic-leucine zipper domain
CDDcd147034.72E-22202251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDKEKSPAPP CGGLPPPSPS GRCSAFSEAG PIGHGSDANR MSHDISRMLD NPPKKIGHRR  60
AHSEILTLPD DLSFDSDLGV VGNAADGASF SDETEEDLLS MYLDMDKFNS SATSSAQVGE  120
PSGTAWKNES MMQTDSTSNP QNTLNSFGER PRIRHQHSQS MDGSMNINEM LMSGNEDDSA  180
IDAKKSMSAT KLAELALIDP KRAKRIWANR QSAARSKERK TRYIFELERK VQTLQTEATT  240
LSAQLTLLQR DTNGLTVENN ELKLRLQTME QQVHLQDELN EALKEEIQHL KVLTGQVAPS  300
TLNYGSFGSN QQFYSNNQSM QTILAAKQFQ QLEIHSQKQQ QQQQQHQQQQ QYQFQQQQMQ  360
QLMQQRIQQQ EQQNGVRLKP SQPQKES*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10072s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3170870.0AK317087.1 Arabidopsis thaliana AT2G31370 mRNA, complete cds, clone: RAFL21-87-G20.
GenBankAY0575340.0AY057534.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.
GenBankAY1130580.0AY113058.1 Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884899.10.0probable transcription factor PosF21
RefseqXP_020884900.10.0probable transcription factor PosF21
RefseqXP_020884901.10.0probable transcription factor PosF21
RefseqXP_020884902.10.0probable transcription factor PosF21
SwissprotQ040880.0POF21_ARATH; Probable transcription factor PosF21
TrEMBLD7LDK30.0D7LDK3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1126__AT2G31370.40.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.60.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]