PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10160s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-PHD
Protein Properties Length: 776aa    MW: 88153.1 Da    PI: 4.7183
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10160s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-10462506953
                           HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
              Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                           ++ +e L ++F+++  p+++ r +L+k+l+L+ ++V  WF+N R+
  Araha.10160s0001.1.p 462 RNAVEKLRQVFAETELPTKAVRDRLSKELSLDPEKVNKWFKNTRY 506
                           578899*************************************97 PP
2PHD46.58.1e-16192247151
                           SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                   PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                           +C+vC++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Araha.10160s0001.1.p 192 FCAVCNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdlGWFCKFCDCK 247
                           7******55455********56*******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.29E-15184249IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.3E-13188247IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.154190247IPR019787Zinc finger, PHD-finger
CDDcd155043.18E-31192244No hitNo description
SMARTSM002491.8E-11192245IPR001965Zinc finger, PHD-type
PfamPF006285.5E-13192247IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590193244IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.1E-12439505IPR009057Homeodomain-like
SuperFamilySSF466895.99E-10447507IPR009057Homeodomain-like
PROSITE profilePS5007112.811451511IPR001356Homeobox domain
SMARTSM003894.7E-11453515IPR001356Homeobox domain
CDDcd000862.63E-8454506No hitNo description
PfamPF000466.9E-8462506IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MEESETKGRI NQETEKACVS VERIGSTLLS SFVKKGKETS NKRNSKPSKR KTEEEICSKS  60
RNKKYSRGWV RCEEMEEVRV KKTRKRKSKR QQKDNKVEVD DSLRLQRRTR YLLIKMKMQQ  120
NLIDAYATEG WKGQSREKIR PDKELERARK QILNCKLGLR DAIRQLDLLS SVGSMEEKVI  180
APDGSIHHDH IFCAVCNSRE AFPDNDIILC DGTCNRAFHQ KCLDPPLETE SIPPGDLGWF  240
CKFCDCKMEI IDTMNAQIGT HFPVDSNWQD IFNEEASLPI GSEATLNNEA DWPSDDSKDD  300
DYDPEMRETG GGNSSNVSGD GGGDNDGESI STSLSLSSDG VALSTGSWEG HRLSNMLEQC  360
ETSNEETVCG PRQRRTVDYT KLYYEMFGKD AVLQEQGSED EDWGPNDRRK RKRESDAGST  420
LVTMCESSKK DQDVVETLEQ SERDSVSVEN KGGRRPMFRL PRNAVEKLRQ VFAETELPTK  480
AVRDRLSKEL SLDPEKVNKW FKNTRYMALR NRKTGSVKQP GDSKTVSGGE SGPEAVMENN  540
TETNEVQDTL DETVPPGFND SATNQKILSP CTNNQEEIQQ ANVSFPSPTD ESQHYLEQND  600
SSFALVPHEE LSSEMSLKTA VEEKETESKM TEEPHEELSS EMILKTAVEE KETESKMMEV  660
PQEELRCETS LKTAVEEKET ESKMTEESHE ELSNEMSLKT AVEEKETERK MTEEEEFEVV  720
MEMLCRTENK LLDVTQRLER FKTPKGRKKL GKSSSSLTEE DSVVYVPIAE IKEKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287TRKRKS
2407412RRKRKR
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10160s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867379.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLD7MCG10.0D7MCG1_ARALL; Uncharacterized protein
STRINGscaffold_701235.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]