PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10230s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 256aa    MW: 29378.1 Da    PI: 10.6165
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10230s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind42.71.6e-131472384101
                           HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
          HSF_DNA-bind   4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                           + + ++++d++ +++isws++++sfv+ ++++f ++ +++ F   s f+ F+  L+ YgF++ k++++         eF +++F +g+ 
  Araha.10230s0008.1.p 147 NDNVQLVDDPSSDSIISWSKKSKSFVIRNQKKFIRRKIHSRFPfSSTFEKFMSMLKYYGFSERKRSDGL-------LEFGNENFVRGQP 228
                           567899***************************999999999735789****************99987.......************* PP

                           XXXXXXXXXX CS
          HSF_DNA-bind  92 ellekikrkk 101
                            l++++++k+
  Araha.10230s0008.1.p 229 MLMKQMHQKA 238
                           *****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-12140237IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-17150232IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-14151237IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.53E-15151236IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVQHNPRLFC VSQRGIRWKR ISHKDVADQS CKNHRKKTFA DSSHGVEVEP GKPFTLKATE  60
AMGIRRLHLS HATLGGLGNE TVRHILVCNI GDRRPLYLCI LSPGKVDSCQ LNLDFEEADD  120
VIFSVIGPLS IHITGYFLAT PTAFRLNDNV QLVDDPSSDS IISWSKKSKS FVIRNQKKFI  180
RRKIHSRFPF SSTFEKFMSM LKYYGFSERK RSDGLLEFGN ENFVRGQPML MKQMHQKAMM  240
KRINKDLTVF KAERR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10230s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.12e-11HSF family protein