PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10230s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ZF-HD
Protein Properties Length: 179aa    MW: 20839.7 Da    PI: 10.0346
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10230s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer35.91.8e-1129503758
           ZF-HD_dimer 37 taaalkCaACgCHRnFHRreve 58
                          ta++l CaAC+CHR+FHR+e +
  Araha.10230s0011.1.p 29 TAESLICAACDCHRSFHRKEID 50
                          5799***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-112959IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.6E-92949IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.36E-17101175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28105176IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-30114171IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEVREKKDEK MEITRRQSSA LDHRLLPPTA ESLICAACDC HRSFHRKEID GLFVVNFNSF  60
GHSQRPLVSR HVSPIMMSFG GGGGAAESST EDLNKFHQSF SGNGVDQFRQ YQPKKRFRTK  120
FNEEQKEKMM EFAEKIGWRI TKQEDDEVNR FCREINVKRQ VFKVWMHNNK QAAKKKDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-211151731876ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10230s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064390.0AC006439.4 Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565436.11e-100homeobox protein 24
SwissprotQ9ZPW71e-101ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLD7LBB27e-98D7LBB2_ARALL; ATHB24
STRINGAT2G18350.11e-99(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65152543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-97homeobox protein 24