PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10304s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 360aa    MW: 40166.1 Da    PI: 8.6746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10304s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12291336655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Araha.10304s0001.1.p 291 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 336
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-15288347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-11289338No hitNo description
Gene3DG3DSA:4.10.280.103.5E-13290346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9291336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDSNNHLYDP NHTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNDDLGP  60
PKFKDKSPVS STNTSVSYAA TLPPPPQLEP SSFLGLPPHY PRQSKGMMNS VGLDQFLGMN  120
NHYTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNMMNY EEDEESPSNS NGLRRHCSLS  180
SRPPPSLGML SQIPEIAPET NFQYSHWNDP SNFIDNLSSL KRETEDDGKL FLGAQNGKSG  240
NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR  300
ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10304s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2289810.0AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
GenBankBT0153390.0BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankBT0157120.0BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881830.10.0transcription factor bHLH130 isoform X2
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLD7LI370.0D7LI37_ARALL; Basic helix-loop-helix family protein
STRINGscaffold_403077.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]