PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10305s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 28709.3 Da    PI: 6.3783
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10305s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien   rqvtfskRrng++KKA+ELS+LCdaeva+iifsstgk+y++ss
  Araha.10305s0001.1.p  9 KKIENVNSRQVTFSKRRNGLMKKAKELSILCDAEVALIIFSSTGKIYDFSS 59
                          68***********************************************96 PP
2K-box53.97.9e-19911781299
                 K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           +++e   ++ + +k e+e Lq  + +l+G+ L+ +s+ +L +Le+qL++sl +++++K+++ll+qie+++ +ek++ een+ Lrk++e
  Araha.10305s0001.1.p  91 HENEVVLRNDDSMKGELERLQLAIERLKGKALDGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRLQEKRALEENQILRKQVE 178
                           455556667789*************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.987161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-31276IPR002100Transcription factor, MADS-box
CDDcd002652.55E-41275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014865.1E-1590177IPR002487Transcription factor, K-box
PROSITE profilePS5129712.94893183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRIEIKK IENVNSRQVT FSKRRNGLMK KAKELSILCD AEVALIIFSS TGKIYDFSSG  60
CMEQILSRYG YTTASTEHKQ REKQLLISAS HENEVVLRND DSMKGELERL QLAIERLKGK  120
ALDGMSFPDL ISLENQLNES LHSVKDQKTQ ILLNQIERSR LQEKRALEEN QILRKQVEML  180
GRGSGPKVLN ERPQVSSPEA DPESSSSDED ENDNEEHHSD TSLQLGLSST GYCTKRKKPK  240
IELVCDNSGS QVASD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21194192MEF2C
5f28_B5e-21194192MEF2C
5f28_C5e-21194192MEF2C
5f28_D5e-21194192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10305s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3126630.0AF312663.1 Arabidopsis thaliana MADS-box protein AGL18 (AGL18) mRNA, complete cds.
GenBankAK2222200.0AK222220.1 Arabidopsis thaliana mRNA for MADS transcription factor-like protein, complete cds, clone: RAFL25-29-C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882293.11e-170agamous-like MADS-box protein AGL18
RefseqXP_020882294.11e-170agamous-like MADS-box protein AGL18
SwissprotQ9M2K81e-164AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A178VAT61e-161A0A178VAT6_ARATH; AGL18
STRINGBostr.20505s0007.1.p1e-165(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-154AGAMOUS-like 18