PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10308s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 277aa    MW: 30836.1 Da    PI: 4.7448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10308s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.62.1e-102866644
                          HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                          k +r+v  skRr +++ KA  L+ L +a++av + s++ 
  Araha.10308s0004.1.p 28 KQQRSVACSKRRPTLFSKAADLCLLSGANIAVFVTSPDE 66
                          678*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.5911563IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-141574IPR002100Transcription factor, MADS-box
CDDcd002665.97E-2316100No hitNo description
SuperFamilySSF554558.76E-1717108IPR002100Transcription factor, MADS-box
PfamPF003195.5E-102874IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSSSKVSECT MRKRGTKRKI EIEKRFTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF  60
VTSPDENSNV VYSFSGYSPA SEIVDCYLNG KSPPKITNTH SKLGFWWEDP DLYRYCDDLS  120
ELSIIEDRMM RTKKHLMDCL EKKEKSQFVL KTDQNPNTDE IFNNGGSSSS SSSQIASDLG  180
QNPSTSSPSS SHIVSFDQNS YSSLEKIYGE PTSSQVTCFD QNPIFSVGGE SSCDHQSLYL  240
GNEDPGFVNC LCETEEENNG MSVAQETQTQ SMLNEDQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10308s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882147.11e-170uncharacterized protein LOC9313369
TrEMBLD7LME11e-161D7LME1_ARALL; Uncharacterized protein
STRINGscaffold_501175.11e-162(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.11e-134M-type_MADS family protein