PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10347s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 464aa    MW: 51235.9 Da    PI: 8.1646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10347s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30110168160
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers+  ++vv+++Y geH+h+k
  Araha.10347s0003.1.p 110 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSS-GGQVVDTVYFGEHDHPK 168
                           58****************************************.***************85 PP
2WRKY105.82.3e-33282340159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h+
  Araha.10347s0003.1.p 282 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTKLLITTYEGKHDHD 340
                           58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.745105169IPR003657WRKY domain
SuperFamilySSF1182909.15E-25106169IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-26107169IPR003657WRKY domain
SMARTSM007746.9E-35110168IPR003657WRKY domain
PfamPF031067.1E-24111167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-34268342IPR003657WRKY domain
SuperFamilySSF1182901.31E-28276342IPR003657WRKY domain
PROSITE profilePS5081134.991277342IPR003657WRKY domain
SMARTSM007741.3E-38282341IPR003657WRKY domain
PfamPF031062.9E-26283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAEVGKVPAS DMELDHSSET KAGDDVVSAT DKAEVTPVTV TITETVVESS KSTDCKELQQ  60
LVPHTVALQS EVDVASPVSE KAPKISESST ALSLQSGSEG NSPFIREKVM EDGYNWRKYG  120
QKLVKGNEFV RSYYRCTHPN CKAKKQLERS SGGQVVDTVY FGEHDHPKPL TGAVLINQDK  180
RSDVFTAVSK EKSSGSSVQA HRQTEPPKIH GGLHVSVIPP ADDVKTDISQ SSRIKGDSTH  240
KDHTSPSSKR RKKGGNIELS PVERSTNDSR IVVHTQTLFD IVNDGYRWRK YGQKSVKGSP  300
YPRSYYRCSS SGCPVKKHVE RSSHDTKLLI TTYEGKHDHD MPPGRVVTHN NMLDSEVDDK  360
EGDANKTPQS SALQSITKDQ RVEDHPRKKT KTNGFEKSLD QGPVLDEKLK EKIKERSDVN  420
KDQAANHAKP ETKSDDKTTA CHEKAVVTLE NEEQKPKTEP ARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-49109344176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10347s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423900.0AF442390.1 Arabidopsis thaliana WRKY transcription factor 1 splice variant 2 (WRKY1) mRNA, complete cds; alternatively spliced.
GenBankBT0291670.0BT029167.1 Arabidopsis thaliana At2g04880 mRNA, complete cds.
GenBankX929760.0X92976.1 A.thaliana mRNA for ZAP1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886221.10.0WRKY transcription factor 1
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLC0SV430.0C0SV43_ARATH; Uncharacterized protein At2g04880 (Fragment)
STRINGAl_scaffold_0003_29540.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.20.0zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]