PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10360s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 202aa    MW: 21962.7 Da    PI: 8.765
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10360s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.22.5e-3047100155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           +prl+Wtp+LH+rFve+v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Araha.10360s0001.1.p  47 RPRLVWTPQLHKRFVEVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 100
                           59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.59842103IPR017930Myb domain
SuperFamilySSF466895.02E-2044104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-3046105IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-2448100IPR006447Myb domain, plants
PfamPF002491.5E-85099IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEEVVDRVGS SSPGSDPKKQ KKSDGGEAAA EEGDSGTEDA SGKTLKRPRL VWTPQLHKRF  60
VEVVAHLGIK NAVPKTIMQL MNVEGLTREN VASHLQKYRL YLKRIQGLTT EEDPYSSDQL  120
FSSTPVPPQS FQDGGGSNGK LGIPVPSMIP VPGYGNQMSM QGHYHQYRSH GNESNQYMMQ  180
RNKFGTMVTS PSVGGGDVID K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-3547103157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10360s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256040.0AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15.
GenBankAB2065770.0AB206577.1 Arabidopsis thaliana PCLL gene for putative transcription factor, complete cds.
GenBankAK1173480.0AK117348.1 Arabidopsis thaliana At5g59570 mRNA for ARR1 like protein, complete cds, clone: RAFL16-91-G07.
GenBankBT0260650.0BT026065.1 Arabidopsis thaliana At5g59570 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869154.11e-129transcription factor BOA
SwissprotQ9LTH41e-120PCLL_ARATH; Transcription factor BOA
TrEMBLD7MSG31e-128D7MSG3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__1908__AT5G59570.11e-129(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-107G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]