PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1048s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 182aa    MW: 20708.9 Da    PI: 5.7422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1048s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.9e-07112138127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++e+C+f+++++ C  G+ C+++H+p
  Araha.1048s0002.1.p 112 PGEENCPFYLKNHLCGWGSECCYNHPP 138
                          589**********************97 PP
2zf-CCCH27.94e-09151172527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           C+ff + G Ck+G++C+F H++
  Araha.1048s0002.1.p 151 DCKFFKA-GSCKRGSNCQFYHPK 172
                          5997777.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.366111139IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4113138IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5147172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6150171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502151173IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6151172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5152172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MANVSFTLDS QGQTQELRPS GLGSRSDERT GRRQGKEPEK MEKEELGFGV SEEGEIPDQQ  60
ESDADSDVRD YLKQQQRART PDRRGSESKL MLDERTQGRS ESVLSSAYPI RPGEENCPFY  120
LKNHLCGWGS ECCYNHPPLH EIPYRIGNKL DCKFFKAGSC KRGSNCQFYH PKERDGAEPM  180
LQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1048s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867243.11e-109LOW QUALITY PROTEIN: putative zinc finger CCCH domain-containing protein 10
SwissprotQ9C7P15e-80C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10
TrEMBLD7KDV61e-108D7KDV6_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10023931e-109(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.12e-82C3H family protein