PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.10539s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 181aa    MW: 19615 Da    PI: 8.0943
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.10539s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.61.1e-3034123288
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaess 78 
                           ag+  r++++hTkv gR RRv ++a+ aar+ +L++eLG+++ ++tieWLl qa+p+i+++tg                       ++s
  Araha.10539s0002.1.p  34 AGGGARTKDRHTKVKGRSRRVTMPALAAARISQLTRELGHKTEGETIEWLLSQAEPSIIAATGYgtklisnwvdvaA---------VDS 113
                           56778***********************************************************5544444333321.........222 PP

                   TCP  79 sssasnsssg 88 
                           sss ++++++
  Araha.10539s0002.1.p 114 SSSPQTQTQT 123
                           2222222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2439121IPR005333Transcription factor, TCP
PROSITE profilePS5136922.6734094IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MIFQIACRNE SNFNAIASES RSQTQIAVSK SSSAGGGART KDRHTKVKGR SRRVTMPALA  60
AARISQLTRE LGHKTEGETI EWLLSQAEPS IIAATGYGTK LISNWVDVAA VDSSSSPQTQ  120
TQTPQSPSCR LDLCQPIGIQ YPVNGYSHMP FTAMLLEPMT TAAESEVEIA AEEERTRRHH  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.10539s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069220.0AC006922.7 Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence.
GenBankBT0107000.0BT010700.1 Arabidopsis thaliana At2g37000 mRNA, complete cds.
GenBankBT0115040.0BT011504.1 Arabidopsis thaliana At2g37000 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883892.15e-94transcription factor TCP11
SwissprotQ9SJK75e-93TCP11_ARATH; Transcription factor TCP11
TrEMBLD7LJA41e-92D7LJA4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__1743__AT2G37000.12e-93(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.15e-78TCP family protein