PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.10656s0016.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 295aa MW: 33933.6 Da PI: 9.3357

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.10656s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.1	2.4e-51	33	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp+GfrFhPtdeelv++yL+++++++++++ vi+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg d Araha.10656s0016.1.p 33 LPAGFRFHPTDEELVKFYLCRRCASEPINV-PVIAEIDLYKFNPWELPEMALYGEKEWYFFSHRDRKYPNGSRPNRAAGSGYWKATGAD 120 799*************************.89***********7666789****************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ + ++ g+kk Lvfy g+apkg+kt+W+mheyrl Araha.10656s0016.1.p 121 KPIGK--PKTLGIKKALVFYAGKAPKGVKTNWIMHEYRL 157 98..778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-61	25	185	IPR003441	NAC domain
PROSITE profile	PS51005	59.099	33	185	IPR003441	NAC domain
Pfam	PF02365	1.6E-26	34	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001666	Biological Process	response to hypoxia
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009507	Cellular Component	chloroplast
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
TKIRFKGFKN SKSNLIHKKT KNFFQKMKAE LNLPAGFRFH PTDEELVKFY LCRRCASEPI 60 NVPVIAEIDL YKFNPWELPE MALYGEKEWY FFSHRDRKYP NGSRPNRAAG SGYWKATGAD 120 KPIGKPKTLG IKKALVFYAG KAPKGVKTNW IMHEYRLANV DRSASTNKKN NLRLDDWVLC 180 RIYNKKGTME KYYPAADEKP TAKMSTSDSR CSSHVISPDV TCSDNWEVES EPKWINLEDA 240 LEAFNDTSMF SSIDLLQNDA FVPQFAYQSS EFVDSFQDPL EQKPFLNWNF APQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-83	28	191	10	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.10656s0016.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088431	0.0	AY088431.1 Arabidopsis thaliana clone 6637 mRNA, complete sequence.
GenBank	BT000896	0.0	BT000896.1 Arabidopsis thaliana clone C104908 unknown protein (At5g63790) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866576.1	0.0	NAC domain-containing protein 102
Swissprot	Q8H115	0.0	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	D7MPS8	0.0	D7MPS8_ARALL; Predicted protein
STRING	Al_scaffold_0008_2913	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	0.0	NAC domain containing protein 102

Link Out ? help Back to Top
Phytozome	Araha.10656s0016.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]