PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1084s0023.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 204aa MW: 22392.8 Da PI: 7.8758

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1084s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	109	7.2e-34	33	139	52	154
DUF702 52 rqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtav 136 r ++ + ++ a++ e+ +kr+re+ ++++++l +t+++s++++ le+ ++P+ev+s+avfrcvrvssvdd+eee+aY+tav Araha.1084s0023.1.p 33 REKERGDREFNKRARRvsqpqGESVPKRQREHIQARSTSLVCTRIPSNNTS-GLEVGHFPPEVRSPAVFRCVRVSSVDDEEEEYAYKTAV 121 32222222222211112344589999******************99866.99999***************************** PP DUF702 137 sigGhvfkGiLydqGlee 154 sigGhvfkGiLydqG++e Araha.1084s0023.1.p 122 SIGGHVFKGILYDQGPAE 139 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-29	30	138	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	3.3E-27	89	137	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MINGEIYLVR EVFCDINWCK ENLENKQKGK REREKERGDR EFNKRARRVS QPQGESVPKR 60 QREHIQARST SLVCTRIPSN NTSGLEVGHF PPEVRSPAVF RCVRVSSVDD EEEEYAYKTA 120 VSIGGHVFKG ILYDQGPAER SSSGGGSQPL NLITAGPSAS SSSPNVSCNN GVVGSTSDHY 180 IDPASLSYPT PINTFMTGQD SRV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1084s0023.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493816	0.0	AB493816.1 Arabidopsis thaliana At5g66350 mRNA for hypothetical protein, partial cds, clone: RAAt5g66350.
GenBank	AF152555	0.0	AF152555.1 Arabidopsis thaliana putative zinc finger protein SHI (SHI) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865074.2	2e-93	protein SHORT INTERNODES
Swissprot	Q9XGX0	2e-87	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	D7MMY6	2e-88	D7MMY6_ARALL; Uncharacterized protein
STRING	Bostr.0568s0045.1.p	4e-90	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	5e-63	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Araha.1084s0023.1.p

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]