PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1089s0011.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

WOX

Protein Properties

Length: 196aa MW: 21889.5 Da PI: 5.0833

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1089s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.7e-20	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +++ + +p+ ++++e++++l ++te+ V++WFqNrRa+ k+ Araha.1089s0011.1.p 77 RHRWTPTSMQLQILENIYKEgSGTPNPRRIKEITMELsehgEITEKSVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	99.2	3.1e-32	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe++yk+G tPn ++i++it+eL+e+G+i++k V++WFQNr+aR+++kq Araha.1089s0011.1.p 76 TRHRWTPTSMQLQILENIYKEGSGTPNPRRIKEITMELSEHGEITEKSVYNWFQNRRARSKRKQ 139 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-15	71	141	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.18E-17	71	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.268	73	138	IPR001356	Homeobox domain
SMART	SM00389	1.9E-12	75	142	IPR001356	Homeobox domain
Pfam	PF00046	7.6E-18	77	137	IPR001356	Homeobox domain
CDD	cd00086	2.41E-13	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEQESLNGTF DGRVMTEEQM ETLRKQIAIY AVLCDQLVFL HNSLSSVPLL SSGMNSMGGG 60 YFDPMVASSS SQGMSTRHRW TPTSMQLQIL ENIYKEGSGT PNPRRIKEIT MELSEHGEIT 120 EKSVYNWFQN RRARSKRKQP QTTTITSGQA DDAAVTTEER GSCGDSGGFE SYEHILFPSP 180 DLGIEHLLNR DKFID*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Potential transcription factor that plays a central role during developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1089s0011.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069251	1e-148	AC069251.5 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence.
GenBank	CP002684	1e-148	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010459763.1	1e-120	PREDICTED: putative WUSCHEL-related homeobox 10
Swissprot	Q9LM83	1e-110	WOX10_ARATH; Putative WUSCHEL-related homeobox 10
TrEMBL	D7KJ50	1e-127	D7KJ50_ARALL; Homeobox-leucine zipper family protein
STRING	fgenesh1_pm.C_scaffold_1001761	1e-128	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20710.1	1e-107	WUSCHEL related homeobox 10

Link Out ? help Back to Top
Phytozome	Araha.1089s0011.1.p