PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11259s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 210aa    MW: 23627.2 Da    PI: 9.9914
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11259s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.88.9e-301741997
                DUF573 19 lidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                          +idfka+tgksp++d++ fyef+kksisf+vsk+q+++Kir+L+kK+ +k+ k     epsf k+hd+k+felsk iWg
  Araha.11259s0001.1.p  1 MIDFKADTGKSPYEDTNVFYEFLKKSISFEVSKNQFMDKIRSLRKKYIGKEGK-----EPSFVKAHDKKAFELSKFIWG 74
                          9***********************************************99888.....********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-21174IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MIDFKADTGK SPYEDTNVFY EFLKKSISFE VSKNQFMDKI RSLRKKYIGK EGKEPSFVKA  60
HDKKAFELSK FIWGPKGIAL DSNVKSNGLS KKSAKKKKID SVKQELVFVG GGSSTNGKKV  120
EDGGGDDKEV LVHGGDWFDN SSLVRMIAGL GVDEYYVKQQ WSLVPVETKK IIEEKFKLLQ  180
AKELEFVLEK TKFLQEVTSM IVEASKKNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11259s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878220.0AY087822.1 Arabidopsis thaliana clone 38650 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890091.11e-135probable transcription factor At1g61730
SwissprotQ9SYA91e-115STKLD_ARATH; Probable transcription factor At1g61730
TrEMBLA0A178WJA11e-113A0A178WJA1_ARATH; Uncharacterized protein
STRINGAT1G61730.11e-113(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-100DNA-binding storekeeper protein-related transcriptional regulator