PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11265s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 277aa    MW: 31557.6 Da    PI: 10.1156
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11265s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.3e-162570248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rWT  Ed++l+++v+  G++ W+ I + m+ gRt+k c+srw+++l
  Araha.11265s0003.1.p 25 SRWTLSEDLKLKELVAVSGPRKWTQIGKQMQ-GRTGKTCRSRWFNHL 70
                          69*****************************.*************97 PP
2Myb_DNA-binding34.54.6e-1178120347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +++ eE++ll++a +++G   W++Iar +  gRt+ q +  w+k+
  Araha.11265s0003.1.p  78 AFSDEEEKLLIKAYNEWGCQ-WSRIARLFR-GRTDRQMQKLWRKV 120
                           79****************88.*********.******99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.1851974IPR017930Myb domain
SuperFamilySSF466892.71E-2323117IPR009057Homeodomain-like
SMARTSM007171.4E-112372IPR001005SANT/Myb domain
PfamPF002494.1E-142670IPR001005SANT/Myb domain
CDDcd001672.85E-102670No hitNo description
Gene3DG3DSA:1.10.10.607.9E-232677IPR009057Homeodomain-like
SMARTSM007171.9E-775123IPR001005SANT/Myb domain
PROSITE profilePS5129411.12975125IPR017930Myb domain
CDDcd001672.77E-678121No hitNo description
Gene3DG3DSA:1.10.10.609.5E-1578123IPR009057Homeodomain-like
PfamPF002495.3E-978120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MESALVAFKR PSNEVHEEIN SLLSSRWTLS EDLKLKELVA VSGPRKWTQI GKQMQGRTGK  60
TCRSRWFNHL DPRIRNDAFS DEEEKLLIKA YNEWGCQWSR IARLFRGRTD RQMQKLWRKV  120
MKKLKKTSTS IHELNANDKR EDSVLGFLRD ESRKMPQEET THLEANKYLK ETRQYLAHQR  180
HFYNIPTGYL PMSTPHVSIS RPSSSSLPSK PEDAFTPHAS ISQPSSSSLP SKPEDAFTPH  240
VSISQPSSSS SLPSKSEEAK ANVPVKYIDF LGVGDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23191232106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11265s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100771e-85AB010077.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH19.
GenBankCP0026881e-85CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870735.21e-131transcription factor MYB105
TrEMBLD7MJE01e-160D7MJE0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70031691e-161(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1909957
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.12e-31myb domain protein 110