PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11357s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 555aa    MW: 60893.8 Da    PI: 8.0548
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11357s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.45.4e-1299158261
                           XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                            + k+  r+ +NRe+A  sRqRKk ++eeLe+kv ++ +  ++L ++++    e  +l++
  Araha.11357s0001.1.p  99 DDEKKNVRLVRNRESAHLSRQRKKHYVEELEDKVRNMHSTISELSSKMSYFMAENVTLRQ 158
                           567999*********************************999999998877766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-1298162IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.691100160IPR004827Basic-leucine zipper domain
PfamPF001705.8E-10102159IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-12102160No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-15102160No hitNo description
CDDcd147043.20E-19106153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSGDFTPASG ISGDCVNEDT VKNKNCVLIS TSIYCDRESP RDSDCSGTTQ SLSLSAHQES  60
AKRKKEIQED SSEESRNNKY RRLDQDGFAS VVTGGGEEDD EKKNVRLVRN RESAHLSRQR  120
KKHYVEELED KVRNMHSTIS ELSSKMSYFM AENVTLRQQM GPRNGMCRPP MYPPLAPMAY  180
PWMPYPAYMV KPQGSQVSLL PIPRLKPQQS VAKVKKIKKV ASVSVLGLLF CLFLFCALAP  240
IVNISYGEYK SNYATDGVYD QSRGRVLFVD SSNKAHCGGG SDQGVRSNVS ETENLGPPRN  300
SSEPLVASLF VPRNEKLVKI DGNLIIHSVL ASEKARDSET KNNEGKSGVA TTTEGIISPA  360
MPLPDSSRTM DMSKHLYSAS RKALSSSSSH DTLKDQLKST TCNGKMQQWF REGIAGPMFS  420
SGMCTEVFQF DVSSTSGSII PASPPTEQSK NTDTHKGKKN RRILHGGLSV SDFNLTEDHN  480
SSSKENIRDT KPAPSMVVSV LVDPREGGDG DIDEMMGGTK SLSPVFIVLL VDDVKYVTYS  540
CILPRPEFPH LVTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11357s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002878099.10.0bZIP transcription factor 49
SwissprotQ9LXX40.0BZP49_ARATH; bZIP transcription factor 49
TrEMBLD7LVI40.0D7LVI4_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50017220.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16991911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.10.0basic region/leucine zipper motif protein 49
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]