PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11451s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 402aa    MW: 46454.9 Da    PI: 6.7949
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11451s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.51.2e-2595191186
              trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                           +W++++v+++i+a ++++e+++++           +kk++W++vsk+m erg+++sp+qC++k+++lnkrykk++e+ +++ ++e++++
  Araha.11451s0007.1.p  95 KWMDKMVKLMITALSYIGEDSSTSDggcgrkfavlQKKGKWRSVSKVMDERGYRVSPQQCEDKFNDLNKRYKKLNEMLGRGtSCEVVEN 183
                           7*********************9866778889999**********************************************669****9 PP

              trihelix  79 cpyfdqle 86 
                            +++d+++
  Araha.11451s0007.1.p 184 PALLDKID 191
                           99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2193217No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MEGNCSQGGI VRGENAHGRF DSQVGSSMRD LRPNAMNQNQ HHPNSRHDSG FDITMDARHN  60
NVDRGKKSMS EEDELCLSCD GQNKSKNNSP WQRVKWMDKM VKLMITALSY IGEDSSTSDG  120
GCGRKFAVLQ KKGKWRSVSK VMDERGYRVS PQQCEDKFND LNKRYKKLNE MLGRGTSCEV  180
VENPALLDKI DYLNEKEKEE VRKIMSSNHL FYEEMCSYHN GNRLHLPHDP AVQRSLHLIT  240
LGSRDDHDND EHGKHQNEDL DDEDDGEEHH LSHGDCRGVH DDRPLKRLRQ SLSHEDPNKG  300
YDVPLLPRSQ ADVSLGMSLD SEKGTGLQRQ RIESKSLELE GRRLQIQAEL MELERQQFRW  360
EVFSKKRDQK LEKMRMENER MKLENERMTL ELKRIELGAK L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAPTransfer from AT1G76870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11451s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935390.0AB493539.1 Arabidopsis thaliana At1g76870 mRNA for hypothetical protein, partial cds, clone: RAAt1g76870.
GenBankAC0792830.0AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887659.10.0uncharacterized protein LOC9325170
TrEMBLD7KTX80.0D7KTX8_ARALL; Uncharacterized protein
STRINGscaffold_202642.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.10.0