PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11451s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 548aa    MW: 63117.4 Da    PI: 8.6344
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11451s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.64.7e-301296187
              trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                          rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++f++lea
  Araha.11451s0009.1.p 12 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEELEA 96
                          8********************************************************************975544..6******985 PP
2trihelix108.93.2e-34368453187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  Araha.11451s0009.1.p 368 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 453
                           8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.086971IPR001005SANT/Myb domain
CDDcd122034.10E-241176No hitNo description
PfamPF138374.8E-201196No hitNo description
PROSITE profilePS500907.0731169IPR017877Myb-like domain
SMARTSM007179.2E-4365427IPR001005SANT/Myb domain
PfamPF138376.6E-24367454No hitNo description
CDDcd122031.41E-25367432No hitNo description
PROSITE profilePS500907.491367425IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-4367424IPR009057Homeodomain-like
SuperFamilySSF466894.44E-5368459IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
ETGEGAGGGG NRWPRPETLA LLRIRSEMDK AFRDSTLKAP LWEEISRKMM ELGYKRSSKK  60
CKEKFENVYK YHKRTKEGRT GKSEGKTYRF FEELEAFETL SSYQPEPESQ PAKSSAAVTT  120
APATTSLIPW ISSSNPSIEK ISSPLKHHHQ VSAQPITTNP TFLAKQPSST TPFPFYSNNN  180
TTTVSQPPIS NDLMNNVSSL NLFSNSTSSS TASDEEEDHH QGKRSRKKRK YWKGLFTKLT  240
KELMEKQKKM QKRFLETLEN REKERITREE AWRVQEIARI NREHEILIHE RSNAAAKDAA  300
IISFLHKISG GQPQQPQQHN HKPSQRKQYR SDHSITFESK EPRPVLLDTT MKMGNYDNNH  360
LVSPSSSRWP KTEVEALIRI RKNLEANYQE NGTKGPLWEE ISAGMRRLGY NRSAKRCKEK  420
WENINKYFKK VKESNKKRPL DSKTCPYFHQ LEALYNERNK SGTMPLPLPL MVTPQRQLLL  480
SQETQTESET DQRDKVGDKE DEEEEGESEE DEYDEEEEGE GDNETSEFEI VLNKTSSPMD  540
INNNLFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15462KRSSKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11451s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0871170.0AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889107.10.0trihelix transcription factor GT-2
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTY00.0D7KTY0_ARALL; Uncharacterized protein
STRINGscaffold_202644.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein