PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1146s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 480aa    MW: 54592 Da    PI: 6.3376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1146s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.43.9e-3861373128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykveP.wdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           G+rF+Pt eel+++yLk+k  g+k l ++e+i+e++i++++P +dLpk  k+++e+ ewyfFs+ + +++++++ +r+t sg+Wk tg 
  Araha.1146s0009.1.p   6 IGYRFSPTGEELINHYLKNKNLGTKtLLVDEAISEINILSHKPsKDLPKlaKIQSEDLEWYFFSPIEYTNRKKNEMKRTTGSGFWKPTGV 95 
                          69******************888874666678***********558995448888888******************************** PP

                  NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++++k  +g ++g kktLv+++g+ p+g++t W mhey++
  Araha.1146s0009.1.p  96 DRKIKDKrgNGVVIGFKKTLVYHEGKGPNGVRTPWAMHEYHI 137
                          ******9777788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.3174155IPR003441NAC domain
SuperFamilySSF1019411.15E-435155IPR003441NAC domain
PfamPF023656.8E-227137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0031965Cellular Componentnuclear membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MVKDLIGYRF SPTGEELINH YLKNKNLGTK TLLVDEAISE INILSHKPSK DLPKLAKIQS  60
EDLEWYFFSP IEYTNRKKNE MKRTTGSGFW KPTGVDRKIK DKRGNGVVIG FKKTLVYHEG  120
KGPNGVRTPW AMHEYHITSL PHDKRKYVIC QVKYKGEAAD ISYEPSHSLD SDSNTTRAAE  180
PRLQVEQPGR ENFLGMSLDD LEQEDPNTYL QPQGPHLALN DDEFIRGLRH VDRGPVEYLF  240
ANEENVDGLS MNDLRIPMIV QQEDLSEWEG FNADTFFSDN NNTHNLNVHQ LTRYGDDYQN  300
AGYNGGNFEG VHPDQELIMQ ENRNDHMPKK PLTGTIDYSS DSGSDAGSIS TTSYQGISSP  360
NISVGSSSRR LSSFSSTDSC KDLQTSADPS ISRETREYQL TQRTVPSKQE VKQEIPRAVD  420
ASMNNESSLV KTEEKCLFIL EDAMERNRKT PRFIYLMIIG FIRRIGFTTR QRLNPLKKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-22713718140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00425DAPTransfer from AT4G01540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1146s0009.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936710.0AB493671.1 Arabidopsis thaliana At4g01540 mRNA for hypothetical protein, partial cds, clone: RAAt4g01540.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872887.10.0NAC domain-containing protein 68
SwissprotA8MQY10.0NAC68_ARATH; NAC domain-containing protein 68
TrEMBLD7M4U20.0D7M4U2_ARALL; ANAC068/NTM1
STRINGscaffold_604133.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.10.0NAC with transmembrane motif1
Publications ? help Back to Top
  1. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]