PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11737s0020.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 130aa    MW: 14028.7 Da    PI: 8.1083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11737s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.81.8e-132953226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          ++++C+++++tG+Ck+G++C+F+H+
  Araha.11737s0020.1.p 29 GQSECDYYMKTGECKFGEKCRFHHP 53
                          7899********************8 PP
2zf-CCCH443.6e-1485107527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C+++++tGtCkyG++CkF H+p
  Araha.11737s0020.1.p  85 NCPYYMKTGTCKYGATCKFDHPP 107
                           6********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-72757IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0752755IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-62754IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-112953IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-63354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38980108IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-680107IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-1185107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-685107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-686105IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVTPATSFYQ TLTQPTLGAL SATYPQRPGQ SECDYYMKTG ECKFGEKCRF HHPADRLSAT  60
SNQASQQPNV KLSLAGYPRR EGALNCPYYM KTGTCKYGAT CKFDHPPPGE VMAKTTSEAD  120
AAGATDTTQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11737s0020.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291450.0AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16.
GenBankAY0243570.0AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884918.18e-87zinc finger CCCH domain-containing protein 37 isoform X2
RefseqXP_020886407.18e-87zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q32e-81C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7L0J22e-85D7L0J2_ARALL; Enhancer of ag-4 1
STRINGfgenesh2_kg.3__1328__AT3G12680.13e-86(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-83floral homeotic protein (HUA1)