PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11825s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 277aa    MW: 31619.4 Da    PI: 4.6224
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11825s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44.1e-2111100198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffkv+   + ++s  lv+p +f+e   ++   +kt++l+   g+ W+v +  +k sg +++t+GW++F+k+++Lk g+f++F +dg+++
  Araha.11825s0002.1.p  11 FFKVF--LSETASESLVIPLSFMEFLAHP--LPKTVKLQGIGGKFWTVSM--KKISGVVYFTTGWSKFAKDHELKNGEFMTFVYDGHRT 93 
                           88999..67777777********877755..999****************..********************************99887 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           f   v+vf+
  Araha.11825s0002.1.p  94 F--EVSVFE 100
                           7..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-248104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.0859102IPR003340B3 DNA binding domain
CDDcd100172.88E-19999No hitNo description
Gene3DG3DSA:2.40.330.102.6E-239101IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-1811100IPR003340B3 DNA binding domain
SMARTSM010191.1E-2011102IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-7177269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-4179268IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MADNSDLFPR FFKVFLSETA SESLVIPLSF MEFLAHPLPK TVKLQGIGGK FWTVSMKKIS  60
GVVYFTTGWS KFAKDHELKN GEFMTFVYDG HRTFEVSVFE RFGCKETRAE IQAIQLSDSD  120
SDSVVEDEED STDDDDDDDD DSSGEDEEIS QSLYPIDEET QTDAAVFEGN LDIQALTNPH  180
FPTRLKNRIY ELLIPANVVN DNKLKFGDSV KYIDGEGTLV GLKGKWADKR ICFKGWDRIC  240
RRNRLKKHQD TVECELLHDD QKMVHSIRVH VLRRTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-2111043104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11825s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936471e-154AB493647.1 Arabidopsis thaliana At3g53310 mRNA for hypothetical protein, partial cds, clone: RAAt3g53310.
GenBankAY0875861e-154AY087586.1 Arabidopsis thaliana clone 36830 mRNA, complete sequence.
GenBankBT0257241e-154BT025724.1 Arabidopsis thaliana At3g53310 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877911.10.0B3 domain-containing protein REM20
SwissprotQ8LAV51e-161REM20_ARATH; B3 domain-containing protein REM20
TrEMBLD7LUG90.0D7LUG9_ARALL; Uncharacterized protein
STRINGscaffold_502422.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-153B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]