PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11825s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family S1Fa-like
Protein Properties Length: 140aa    MW: 15139.8 Da    PI: 10.3396
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11825s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA139.57.1e-4473139470
                  S1FA   4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                           a++eakGlnPGlivllvvgg+llvfl++ny+lyvyaqknlPPrkkkPvskkklkreklkqGv+vPGe
  Araha.11825s0008.1.p  73 AAAEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 139
                           689***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.2E-3875139IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MRSVVQMLIG EADVPVVPKS RPTMSFSTSH LLLSLQDTLS DCSNTVALNS SRSSSWSVPE  60
HNVIIRSDDD HLAAAEAKGL NPGLIVLLVV GGPLLVFLIA NYVLYVYAQK NLPPRKKKPV  120
SKKKLKREKL KQGVPVPGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11825s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3701761e-101AF370176.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAL1329661e-101AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankAY0591361e-101AY059136.1 Arabidopsis thaliana unknown protein (At3g53370) mRNA, complete cds.
GenBankAY0888451e-101AY088845.1 Arabidopsis thaliana clone 97045 mRNA, complete sequence.
GenBankCP0026861e-101CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877915.12e-40L-type lectin-domain containing receptor kinase VIII.1
TrEMBLA0A178V7F88e-60A0A178V7F8_ARATH; Uncharacterized protein
STRINGBo00703s130.13e-54(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769