PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11840s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 283aa    MW: 32191 Da    PI: 8.2775
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11840s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32120178159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vk+s+fpr+YYrCt++ C vkk+vers +dp+ v++tYeg+H+h+
  Araha.11840s0009.1.p 120 LDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHP 178
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-32107180IPR003657WRKY domain
SuperFamilySSF1182902.35E-28113180IPR003657WRKY domain
PROSITE profilePS5081130.836115180IPR003657WRKY domain
SMARTSM007741.4E-37120179IPR003657WRKY domain
PfamPF031069.4E-25121178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MENIGVGMPF YDLGQTRVYP LFSDFHDLSA ERYPVGFMDL LGVHHRHTPT HTPLMHFPTT  60
PNSSSSEAAN GDEKKRDDKE DGEEQPHKTN KRFKISKSIE KTKMKVPKVS FITKSEVLHL  120
DDGYKWRKYG QKPVKDSPFP RNYYRCTTTW CDVKKRVERS FSDPSSVITT YEGQHTHPRP  180
LIIMPKEGSS QSSGSASRAH IGLRTLPPQL LDFNNHQQKH QGPSSFGTEN INRQEKGIDH  240
DDDDDHVVKK SRTRDLLDGA GLVKDHGLLQ DVVSSHIIKE EY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-251131801077Probable WRKY transcription factor 4
2lex_A7e-251131801077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11840s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4211550.0AF421155.1 Arabidopsis thaliana WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567127.11e-157WRKY family transcription factor
SwissprotQ93WV61e-158WRK68_ARATH; WRKY transcription factor 68
TrEMBLA0A178VDY31e-156A0A178VDY3_ARATH; WRKY transcription factor
STRINGBostr.13158s0239.1.p1e-158(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.11e-153WRKY family protein