PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12168s0009.1.p
Common Name11M19.26
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 224aa    MW: 25104.2 Da    PI: 8.6619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12168s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1871121255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  Araha.12168s0009.1.p  71 HYRGVRRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAMEAARGYDKAAFKLRG 121
                           7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-3270130IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2271130IPR016177DNA-binding domain
PROSITE profilePS5103224.34271129IPR001471AP2/ERF domain
SMARTSM003803.6E-3671135IPR001471AP2/ERF domain
PfamPF008472.8E-1271121IPR001471AP2/ERF domain
CDDcd000185.68E-3171129No hitNo description
PRINTSPR003673.7E-107283IPR001471AP2/ERF domain
PRINTSPR003673.7E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MASSHQQQQE QDQSALDLIS QHLLTDFSSL DTFVSSIQHC TTSTLSQRKP PLATIAVPTI  60
APVAQEDDQR HYRGVRRRPW GKYAAEIRDP NKKGVRVWLG TFDTAMEAAR GYDKAAFKLR  120
GSKAILNFPL EAGKYEDYRD SNKTVSLKPK RKRQVTEDES HLSSNKAVKR EEAEIQAQAE  180
VCPLTPSSWM GFWDGEDSKE MRIFSVPPLS PYPSLGHSQL VVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2870136470ATERF1
3gcc_A2e-2870136470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12168s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0032460.0JX003246.1 Arabidopsis halleri clone BAC 11M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871794.11e-141ethylene-responsive transcription factor ERF105-like isoform X1
RefseqXP_020877600.11e-141ethylene-responsive transcription factor ERF105-like isoform X1
SwissprotQ8VY901e-135EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLK4FQC51e-165K4FQC5_ARAHA; Uncharacterized protein
STRINGBostr.15774s0261.1.p1e-144(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-136ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo YL,Todesco M,Hagmann J,Das S,Weigel D
    Independent FLC mutations as causes of flowering-time variation in Arabidopsis thaliana and Capsella rubella.
    Genetics, 2012. 192(2): p. 729-39
    [PMID:22865739]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  4. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  5. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]