PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12210s0014.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 648aa    MW: 73853 Da    PI: 8.714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12210s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-09590634345
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                           +W+t  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  Araha.12210s0014.1.p 590 SWSTVQERALVQALKTFPKEtsqRWERVAAAVP-GKTMNQCKKKFA 634
                           7********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.1E-2095192IPR001623DnaJ domain
SuperFamilySSF465658.64E-2196177IPR001623DnaJ domain
SMARTSM002713.8E-1798173IPR001623DnaJ domain
PfamPF002262.1E-1799178IPR001623DnaJ domain
PROSITE profilePS5007618.30399181IPR001623DnaJ domain
CDDcd062572.08E-1399170IPR001623DnaJ domain
PRINTSPR006251.8E-8104122IPR001623DnaJ domain
PRINTSPR006251.8E-8122137IPR001623DnaJ domain
PRINTSPR006251.8E-8153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.156458513IPR017877Myb-like domain
SuperFamilySSF466893.14E-7460506IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-4462505IPR009057Homeodomain-like
SMARTSM007173.1E-6462515IPR001005SANT/Myb domain
PfamPF002498.2E-6463505IPR001005SANT/Myb domain
CDDcd001676.36E-4465505No hitNo description
SMARTSM007178.7E-9587639IPR001005SANT/Myb domain
SuperFamilySSF466895.61E-9589643IPR009057Homeodomain-like
CDDcd001672.46E-6590637No hitNo description
PfamPF002491.0E-7590635IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5590635IPR009057Homeodomain-like
PROSITE profilePS500907.189590637IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MPSRRSESTV KLITYSEELE DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP  60
TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH YALLGLSNLR YLATEDQIRK  120
SYREAALKHH PDKLATLLLA EETEEAKEAK KDEIESRFKA IQEAYEILMD PTRRRIFDST  180
DEFDDEVPSD CLPQDFFKVF GPAFKRNARW SVNQRIPDLG DENTTLKDVD KFYNFWYAFK  240
SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK  300
RKEEEKAEKQ QKKEAKLLAK KKQAEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEKEK  360
KLLRKERNRL RTLSAPLVAQ RLLGISEEDI ENLCMSLNTE QLQTLCDKMG NKEGLELAKV  420
IKDGCDSSRN DEAESKEKES KKTNGGTEPT PRVSQLDSST QKKQPWSKEE IDMLRKGMIK  480
YPKGTSRRWE VVSEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASISSPL  540
STREELGESL PTTTFTANAK PSRETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV  600
QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-1519529820123Zuotin
5dje_B7e-1519529820123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319337KKKQAEDAAIAAEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12210s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187752.20.0DnaJ and Myb-like DNA-binding domain-containing protein
TrEMBLA0A178VPF00.0A0A178VPF0_ARATH; Uncharacterized protein
STRINGAT3G11450.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain