PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12285s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 589aa    MW: 66121.5 Da    PI: 9.3702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12285s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00036283223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          kC++C++ F ++ n++rH r+H
  Araha.12285s0002.1.p 62 KCEKCSREFCSPVNYRRHNRMH 83
                          7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.726188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENSPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCSREF CSPVNYRRHN RMHRRQRKPE KDSGKERDAL GAFWNKLSAT DAKEILSLKS  120
MMLEDVPGAS VESGLMSLIE KPGYTALPQY YLRAGSGLLD ILQARPPRFP ISSQELFSIL  180
DDASEKTFLC SEAAPMQKYI FDGEIGKTVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL  240
RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQREKDQK KDAKEDESTT SEEQEYPAES  300
SSPLSVASDS EAQRPDSIPI DDSSSLEDPQ VLETNNGRNG ETQAPMVDDD GLGNGQNMER  360
RSGRRQMQRS QQGMPNGFHA NHAPKLGGMR KNGTNRDAIV NTTKVWSRKS DNPKLISQHA  420
ALTQQDQTKV SEFRIGSVSV TIRNSGEHNQ TKCSKGEGRT KTVEAKPTSE QSTVKIWRPV  480
SSQGRKISTV DENSDKEDKK SNSTLPEAKT AHHISLQFNN HEAKAFLAKR WKEATTAEHV  540
TLVLSQETDI SGNNTHESSN GVITARPKLR TKPEKGTKVK YVPKQRIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261268ERKKRKKL
2263267KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12285s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
GenBankBT0003860.0BT000386.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873393.10.0uncharacterized protein LOC9303675 isoform X1
RefseqXP_020873394.10.0uncharacterized protein LOC9303675 isoform X2
TrEMBLD7MFZ10.0D7MFZ1_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.7__1699__AT4G25610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein