PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12428s0016.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 690aa    MW: 76995.7 Da    PI: 6.4751
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12428s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822161.94e-50642141143
                DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaags 84 
                           ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++a aags
  Araha.12428s0016.1.p  64 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPaksQGTKPTggSSAVAAGS 152
                           689******************************************************************9888999**99888888888 PP

                DUF822  85 sas..aspesslq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvl 143
                           sas  as+++s+  ++++ss  +spve +++++k + +p+ps +d  +++s++ + +v + +
  Araha.12428s0016.1.p 153 SAShiASQQTSTPaLRVVSSGRRSPVELSACRMKGVFTPAPSPYDIFPTQSPELVGSVNKAE 214
                           88877889999888***********************************9985555444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.6E-4165200IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.11E-173241686IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.9E-187244686IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.3E-95250670IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64281295IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64302320IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64324345IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060328336IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007503.0E-64417439IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64490509IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64524540IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64541552IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64559582IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.0E-64599621IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MATDMQKLLG TSEEDDDEEM DMDVKEEDDG DRRNRDTRAA SGSSNDEFMF QQSMQDQVGT  60
PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE  120
AGWVVLPDGT TFPAKSQGTK PTGGSSAVAA GSSASHIASQ QTSTPALRVV SSGRRSPVEL  180
SACRMKGVFT PAPSPYDIFP TQSPELVGSV NKAEGLVGCS VDVINSKQIL EIPPNLTEQD  240
FSGTPYVPVY VMLPLGVINM KCEMADRDGL VKHLRILKSI HVDGVKVDCW WGIVEGHSPQ  300
EYNWTGYRQL FQMVRDLNLK IQVLMSFHEC GGNVGDDVCI PLPHWVAEIG RTNPDIYFTD  360
REGRRNPECL SWGIDKERIL RGRTALEVYF DYMRSFRIEL AEFLEDGVIS MVEIGLGPCG  420
ELRYPSCPIK HGWRYPGVGE FQCYDKYLSK SLRKAAESRG HLFWARGPDN TGSYNSQPQG  480
TGFFCDGGDY DGLYGRFFLT WYSQVLIDHA DQILSLAKLV FDSSCIAAKL PDVHWWYRTA  540
SHAAELTAGF YNPSNRDGYA AITSTLKKHG ATLSFVSGEV QVLNRPDDFS GALGEPEAVA  600
WQVLNAAWDS DTPVARENSL PCHDRVGYNK MLESVKFRND PDRRHLSSFA YSRLVPALME  660
GHNIVEFERF VKKLHGEAVM NHHHHHQQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-14124667711444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12428s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882038.10.0beta-amylase 7
RefseqXP_020883208.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLD7LD980.0D7LD98_ARALL; Beta-amylase
STRINGfgenesh1_pg.C_scaffold_40027400.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]