PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12521s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 267aa    MW: 29373.5 Da    PI: 6.5078
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12521s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.38.2e-161979257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          r R+++++eq+ +Le+ F++ + +p ++e  ++ k l     + +++V++WFqNrR + ++
  Araha.12521s0001.1.p 19 RARWSPKPEQILILESIFNSgTVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 79
                          78*****************99*************************************997 PP
2Wus_type_Homeobox105.82.8e-341881265
     Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                          +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q
  Araha.12521s0001.1.p 18 VRARWSPKPEQILILESIFNSGTVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 81
                          589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-141086IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-91485IPR009057Homeodomain-like
PROSITE profilePS5007111.5151580IPR001356Homeobox domain
SMARTSM003895.8E-61784IPR001356Homeobox domain
PfamPF000461.9E-131979IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDQEGASHSP SSTSTEPVRA RWSPKPEQIL ILESIFNSGT VNPPKDETVR IRKMLEKFGA  60
VGDANVFYWF QNRRSRSRRR QRQLQAATAA AVTSIGAEDH QHMTAMSMHQ YPCSNSEIGL  120
GFGSNSNSSA SYFLNGSSSS QVPSFFLGLS SPSGEYESNN GMENLFKMYG HESDHHHQQH  180
QSSNAASVLS PSDQNFNFQD QQGCMTVFIN GVPTEVTKGA IDMKAMFGED SVLLHSSGLP  240
LPTDEFGFLM HSLQHGQAYF LVPRQT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12521s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514030.0AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877800.11e-179WUSCHEL-related homeobox 12
SwissprotQ8GY251e-152WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBLD7LXM91e-176D7LXM9_ARALL; Predicted protein
STRINGAl_scaffold_0006_16941e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.21e-141WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]