PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12732s0021.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 204aa    MW: 23415.9 Da    PI: 9.5515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12732s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-112876555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           + +E++RR +++s ++eL +llP++   + + l+  + L +A++YIk+Lq
  Araha.12732s0021.1.p 28 RKTIEKNRRMQMKSLYSELISLLPHQ--SSREPLTLPDELDEATNYIKKLQ 76
                          5789*********************6..26777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.47E-52380No hitNo description
SuperFamilySSF474597.95E-102390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1852375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-82890IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-72976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVYVKQFKKK KTMEPSHSNT GQSRSVDRKT IEKNRRMQMK SLYSELISLL PHQSSREPLT  60
LPDELDEATN YIKKLQVNVE KKRERKRKLV ATTTFEKLNS VGSSSVSSSV DVSVPRRLPK  120
IEIQETGSIF HIFLVTSLEH KFMFCEIVRL LTEELGAEIT HAGYSIVNDA VFHTLHCKVE  180
ECDYGARSQI PERLEKFVNS VHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17988EKKRERKRKL
28188KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12732s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936860.0AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869917.21e-148transcription factor bHLH162 isoform X2
SwissprotF4JIJ71e-117BH162_ARATH; Transcription factor bHLH162
TrEMBLD7MFG51e-137D7MFG5_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_70017301e-138(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-111bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]