PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12744s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 26444.2 Da    PI: 9.7768
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12744s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.45.9e-31959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+++fs++gkl+eys+
  Araha.12744s0001.1.p  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYST 59
                          79***********************************************96 PP
2K-box107.81.2e-35791745100
                 K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                           +  + e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iR++Kn+l++e+i+elq+kek++qe+n +
  Araha.12744s0001.1.p  79 QLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLNAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQRKEKAIQEQNSM 167
                           555556667889***************************************************************************** PP

                 K-box  94 Lrkklee 100
                           L+k+++e
  Araha.12744s0001.1.p 168 LSKQIKE 174
                           ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-34289IPR002100Transcription factor, MADS-box
CDDcd002658.53E-42279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014866.4E-3085172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.10488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA KIELLERNQR HYLGEDLNAM  120
SPKELQNLEQ QLDTALKHIR TRKNQLMYES INELQRKEKA IQEQNSMLSK QIKEREKILR  180
AQQEQWDQQN HGHNMPPPPP PQQHQIQHPY MLSHQPSPFL NMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-22174173MEF2 CHIMERA
6byy_B2e-22174173MEF2 CHIMERA
6byy_C2e-22174173MEF2 CHIMERA
6byy_D2e-22174173MEF2 CHIMERA
6bz1_A2e-22174173MEF2 CHIMERA
6bz1_B2e-22174173MEF2 CHIMERA
6bz1_C2e-22174173MEF2 CHIMERA
6bz1_D2e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12744s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ164210.0Z16421.1 A.thaliana mRNA for AP1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865978.11e-165floral homeotic protein APETALA 1
SwissprotD7KWY61e-166AP1_ARALL; Floral homeotic protein APETALA 1
TrEMBLQ9SEG11e-163Q9SEG1_ARALY; Apetala 1 (Fragment)
STRINGfgenesh2_kg.2__1169__AT1G69120.11e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-138MIKC_MADS family protein
Publications ? help Back to Top
  1. Hu TT, et al.
    The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
    Nat. Genet., 2011. 43(5): p. 476-81
    [PMID:21478890]