PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.12793s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 248aa    MW: 28931.1 Da    PI: 9.3322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.12793s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.5e-0987136155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+r h   Er RR++ ++ +  L +llP a     +K++K +i+ekAv+ I +Lq
  Araha.12793s0002.1.p  87 RCRRHMLKERTRREKQKQNYLALHSLLPFA-----TKNDKNSIVEKAVDEIGKLQ 136
                           6788999***********************.....9***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1180148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.47E-984140No hitNo description
PROSITE profilePS5088812.29786135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-687136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-790152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-492141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDNFFLDLVC QEDDNFWDLI GDISGNDDKS VSVPNRSAFR SYVKGTEHML MSPGITSSKV  60
NVKKRMVNLL RKNWEEKKNA VAPEKERCRR HMLKERTRRE KQKQNYLALH SLLPFATKND  120
KNSIVEKAVD EIGKLQRLKK ELEKRIKVIE EKSAKDDHDN MSETKVRFNL QEPLSGLDSM  180
LEVLHYLKSM GTKLKTVHAN FSPQEFSATM NIETQIRGEE VEKRVERRLQ ENEWKLLFLP  240
EASCYKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.12793s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0653900.0AY065390.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
GenBankAY0967180.0AY096718.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868383.11e-180transcription factor bHLH92
SwissprotQ9FIX51e-155BH092_ARATH; Transcription factor bHLH92
TrEMBLD7MXG41e-179D7MXG4_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.390__1__AT5G43650.11e-180(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-132bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]